IL_6Y7C_077

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_077 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.2063

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6Y7C|1|2|U|1669
6Y7C|1|2|G|1670
6Y7C|1|2|A|1671
6Y7C|1|2|G|1672
*
6Y7C|1|2|C|1729
6Y7C|1|2|A|1730
6Y7C|1|2|A|1731
6Y7C|1|2|A|1732

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A