IL_6Y7C_080

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_080 not in the Motif Atlas

Geometric match to IL_2A64_005

Geometric discrepancy: 0.2021

The information below is about IL_2A64_005

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6Y7C|1|2|A|1678
6Y7C|1|2|G|1679
6Y7C|1|2|G|1680
6Y7C|1|2|A|1681
6Y7C|1|2|U|1682
*
6Y7C|1|2|A|1719
6Y7C|1|2|G|1720
6Y7C|1|2|A|1721
6Y7C|1|2|A|1722
6Y7C|1|2|U|1723

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A