IL_6Y7C_082

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_082 not in the Motif Atlas

Geometric match to IL_7RQB_005

Geometric discrepancy: 0.2719

The information below is about IL_7RQB_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6Y7C|1|2|U|1771
6Y7C|1|2|C|1772
*
6Y7C|1|2|G|1789
6Y7C|1|2|A|1790
6Y7C|1|2|A|1791

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A

Chain h

Pre-rRNA-processing protein PNO1