IL_6Y7C_083

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGUU*AAA

Length

8 nucleotides

Bulged bases

6Y7C|1|2|C|114, 6Y7C|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_083 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2842

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6Y7C|1|2|U|113
6Y7C|1|2|C|114
6Y7C|1|2|G|115
6Y7C|1|2|U|116
6Y7C|1|2|U|117
*
6Y7C|1|2|A|299
6Y7C|1|2|A|300
6Y7C|1|2|A|301

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A