IL_6Y7C_085
3D structure
- PDB id
- 6Y7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAGU*AUCAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y7C_085 not in the Motif Atlas
- Geometric match to IL_8ZA4_001
- Geometric discrepancy: 0.2706
- The information below is about IL_8ZA4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Y7C|1|2|C|627
6Y7C|1|2|G|628
6Y7C|1|2|U|629
6Y7C|1|2|A|630
6Y7C|1|2|G|631
6Y7C|1|2|U|632
*
6Y7C|1|2|A|967
6Y7C|1|2|U|968
6Y7C|1|2|C|969
6Y7C|1|2|A|970
6Y7C|1|2|A|971
6Y7C|1|2|G|972
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S11-A
- Chain N
- 40S ribosomal protein S13
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
Coloring options: