IL_6YAL_006
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6YAL|1|2|C|65, 6YAL|1|2|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_006 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1647
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YAL|1|2|U|63
6YAL|1|2|A|64
6YAL|1|2|C|65
6YAL|1|2|G|66
6YAL|1|2|C|67
6YAL|1|2|A|68
*
6YAL|1|2|U|81
6YAL|1|2|G|82
6YAL|1|2|A|83
6YAL|1|2|A|84
6YAL|1|2|A|85
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein eS6
- Chain a
- 40S ribosomal protein eS24
Coloring options: