3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
6YAL|1|2|U|172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAL_011 not in the Motif Atlas
Homologous match to IL_4V88_394
Geometric discrepancy: 0.1468
The information below is about IL_4V88_394
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.3
Basepair signature
cWW-cWW-tWH-tWH-tHW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

6YAL|1|2|G|145
6YAL|1|2|G|146
6YAL|1|2|A|147
6YAL|1|2|U|148
6YAL|1|2|A|149
6YAL|1|2|A|150
6YAL|1|2|C|151
*
6YAL|1|2|G|167
6YAL|1|2|C|168
6YAL|1|2|U|169
6YAL|1|2|A|170
6YAL|1|2|A|171
6YAL|1|2|U|172
6YAL|1|2|A|173
6YAL|1|2|C|174

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain I
40S ribosomal protein eS6
Chain a
40S ribosomal protein eS24

Coloring options:


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