IL_6YAL_030
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_030 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.1365
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
6YAL|1|2|A|589
6YAL|1|2|G|590
6YAL|1|2|G|591
6YAL|1|2|G|592
6YAL|1|2|C|593
6YAL|1|2|A|594
6YAL|1|2|A|595
6YAL|1|2|G|596
*
6YAL|1|2|C|626
6YAL|1|2|U|627
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- beta-globin mRNA
- Chain E
- 40S ribosomal protein uS5
- Chain L
- 40S ribosomal protein uS4
- Chain i
- 40S ribosomal protein eS30
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