IL_6YAL_050

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6YAL|1|2|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_050 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1516

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6YAL|1|2|G|948
6YAL|1|2|C|949
6YAL|1|2|U|950
6YAL|1|2|A|951
6YAL|1|2|G|952
*
6YAL|1|2|C|963
6YAL|1|2|U|964
6YAL|1|2|U|965
6YAL|1|2|G|966
6YAL|1|2|G|967
6YAL|1|2|A|968
6YAL|1|2|C|969
6YAL|1|2|C|970

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 2 subunit alpha

Chain D

40S ribosomal protein eS1

Chain Q

40S ribosomal protein uS11