IL_6YAL_057

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_057 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1086

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6YAL|1|2|G|1164
6YAL|1|2|G|1165
6YAL|1|2|A|1166
6YAL|1|2|G|1167
6YAL|1|2|U|1168
6YAL|1|2|A|1169
6YAL|1|2|U|1170
6YAL|1|2|G|1171
*
6YAL|1|2|U|1182
6YAL|1|2|G|1183
6YAL|1|2|A|1184
6YAL|1|2|A|1185
6YAL|1|2|A|1186
6YAL|1|2|C|1187

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein uS12

Chain l

60s ribosomal protein ul41