IL_6YAL_070

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6YAL|1|2|A|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_070 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2261

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6YAL|1|2|C|1333
6YAL|1|2|G|1334
*
6YAL|1|2|C|1484
6YAL|1|2|A|1485
6YAL|1|2|G|1486

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

beta-globin mRNA

Chain E

40S ribosomal protein uS5

Chain F

40S Ribosomal protein uS3

Chain S

40S ribosomal protein uS9

Chain W

40S ribosomal protein uS10

Chain e

40S ribosomal protein uS14

Chain j

eukaryotic translation initiation factor 1A