IL_6YAL_084

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6YAL|1|2|C|1696, 6YAL|1|2|A|1829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_084 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1782

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6YAL|1|2|C|1695
6YAL|1|2|C|1696
6YAL|1|2|G|1697
*
6YAL|1|2|C|1827
6YAL|1|2|A|1828
6YAL|1|2|A|1829
6YAL|1|2|G|1830

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

beta-globin mRNA

Chain b

40S ribosomal protein eS26

Chain j

eukaryotic translation initiation factor 1A