IL_6YAL_085

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_085 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1295

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6YAL|1|2|G|1697
6YAL|1|2|C|1698
6YAL|1|2|C|1699
6YAL|1|2|C|1700
*
6YAL|1|2|G|1823
6YAL|1|2|U|1824
6YAL|1|2|A|1825
6YAL|1|2|A|1826
6YAL|1|2|C|1827

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

beta-globin mRNA

Chain j

eukaryotic translation initiation factor 1A

Chain l

60s ribosomal protein ul41