IL_6YAL_086

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAL_086 not in the Motif Atlas

Geometric match to IL_4P3T_006

Geometric discrepancy: 0.1483

The information below is about IL_4P3T_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6YAL|1|2|G|1701
6YAL|1|2|U|1702
6YAL|1|2|C|1703
*
6YAL|1|2|G|1820
6YAL|1|2|U|1821
6YAL|1|2|C|1822

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

beta-globin mRNA

Chain R

40S ribosomal protein uS19

Chain j

eukaryotic translation initiation factor 1A

Chain l

60s ribosomal protein ul41