IL_6YAL_101
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_101 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.2327
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YAL|1|2|C|1094
6YAL|1|2|G|1095
6YAL|1|2|A|1096
6YAL|1|2|U|1097
6YAL|1|2|G|1098
6YAL|1|2|C|1099
*
6YAL|1|2|G|1125
6YAL|1|2|G|1126
6YAL|1|2|G|1127
6YAL|1|2|C|1128
6YAL|1|2|A|1129
6YAL|1|2|G|1130
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein uS2
- Chain D
- 40S ribosomal protein eS1
- Chain P
- 40S ribosomal protein uS15
- Chain b
- 40S ribosomal protein eS26
- Chain c
- 40S ribosomal protein eS27
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