IL_6YAM_011

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6YAM|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1467

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6YAM|1|2|G|145
6YAM|1|2|G|146
6YAM|1|2|A|147
6YAM|1|2|U|148
6YAM|1|2|A|149
6YAM|1|2|A|150
6YAM|1|2|C|151
*
6YAM|1|2|G|167
6YAM|1|2|C|168
6YAM|1|2|U|169
6YAM|1|2|A|170
6YAM|1|2|A|171
6YAM|1|2|U|172
6YAM|1|2|A|173
6YAM|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein eS6

Chain a

40S ribosomal protein eS24