IL_6YAM_020

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6YAM|1|2|U|418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_020 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1129

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6YAM|1|2|G|401
6YAM|1|2|G|402
6YAM|1|2|G|403
*
6YAM|1|2|C|414
6YAM|1|2|G|415
6YAM|1|2|A|416
6YAM|1|2|U|417
6YAM|1|2|U|418
6YAM|1|2|C|419

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain L

40S ribosomal protein uS4

Chain Z

40S ribosomal protein uS12