IL_6YAM_029

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_029 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2336

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6YAM|1|2|U|556
6YAM|1|2|C|557
6YAM|1|2|C|558
6YAM|1|2|A|559
*
6YAM|1|2|U|571
6YAM|1|2|U|572
6YAM|1|2|A|573
6YAM|1|2|A|574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein uS4

Chain a

40S ribosomal protein eS24