IL_6YAM_030

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_030 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1366

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6YAM|1|2|A|589
6YAM|1|2|G|590
6YAM|1|2|G|591
6YAM|1|2|G|592
6YAM|1|2|C|593
6YAM|1|2|A|594
6YAM|1|2|A|595
6YAM|1|2|G|596
*
6YAM|1|2|C|626
6YAM|1|2|U|627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

beta-globin mRNA

Chain E

40S ribosomal protein uS5

Chain L

40S ribosomal protein uS4

Chain i

40S ribosomal protein eS30