IL_6YAM_038

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGC*GCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_038 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3094

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6YAM|1|2|G|748
6YAM|1|2|C|749
6YAM|1|2|G|750
6YAM|1|2|C|751
*
6YAM|1|2|G|785
6YAM|1|2|C|786
6YAM|1|2|C|787
6YAM|1|2|C|788

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein eS6