IL_6YAM_053
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6YAM|1|2|C|1149, 6YAM|1|2|U|1151, 6YAM|1|2|G|1153
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAM_053 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1313
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YAM|1|2|C|1087
6YAM|1|2|G|1088
6YAM|1|2|A|1089
*
6YAM|1|2|U|1148
6YAM|1|2|C|1149
6YAM|1|2|U|1150
6YAM|1|2|U|1151
6YAM|1|2|U|1152
6YAM|1|2|G|1153
6YAM|1|2|G|1154
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS5
- Chain N
- 40S ribosomal protein uS17
- Chain P
- ribosomal protein uS15
- Chain Y
- 40S ribosomal protein uS8
- Chain Z
- 40S ribosomal protein uS12
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