IL_6YAM_054
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAM_054 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.144
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6YAM|1|2|C|1094
6YAM|1|2|G|1095
6YAM|1|2|A|1096
6YAM|1|2|U|1097
*
6YAM|1|2|G|1127
6YAM|1|2|C|1128
6YAM|1|2|A|1129
6YAM|1|2|G|1130
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein uS2
- Chain D
- 40S ribosomal protein eS1
- Chain P
- ribosomal protein uS15
- Chain b
- 40S ribosomal protein eS26
- Chain c
- 40S ribosomal protein eS27
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