IL_6YAM_055

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_055 not in the Motif Atlas

Geometric match to IL_2H1M_003

Geometric discrepancy: 0.2231

The information below is about IL_2H1M_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6YAM|1|2|U|1097
6YAM|1|2|G|1098
6YAM|1|2|C|1099
*
6YAM|1|2|G|1125
6YAM|1|2|G|1126
6YAM|1|2|G|1127

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein eS1

Chain P

ribosomal protein uS15

Chain c

40S ribosomal protein eS27