IL_6YAM_085
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAM_085 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.1295
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YAM|1|2|G|1697
6YAM|1|2|C|1698
6YAM|1|2|C|1699
6YAM|1|2|C|1700
*
6YAM|1|2|G|1823
6YAM|1|2|U|1824
6YAM|1|2|A|1825
6YAM|1|2|A|1826
6YAM|1|2|C|1827
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- beta-globin mRNA
- Chain j
- eukaryotic translation initiation factor 1A
- Chain l
- 60s ribosomal protein l41
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