IL_6YAM_102
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6YAM|1|2|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAM_102 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3851
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YAM|1|2|G|1277
6YAM|1|2|A|1278
6YAM|1|2|C|1279
6YAM|1|2|A|1280
6YAM|1|2|G|1281
6YAM|1|2|G|1282
6YAM|1|2|A|1283
6YAM|1|2|U|1284
6YAM|1|2|U|1285
6YAM|1|2|G|1286
*
6YAM|1|2|C|1305
6YAM|1|2|U|1306
6YAM|1|2|C|1307
6YAM|1|2|G|1308
6YAM|1|2|A|1309
6YAM|1|2|U|1310
6YAM|1|2|U|1311
6YAM|1|2|C|1312
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein eS10
- Chain O
- 40S ribosomal protein eS12
- Chain e
- ribosomal protein uS14
- Chain f
- ribosomal protein eS31
Coloring options: