3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GACAGGAUUG*CUCGAUUC
Length
18 nucleotides
Bulged bases
6YAM|1|2|G|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAM_102 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.3851
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6YAM|1|2|G|1277
6YAM|1|2|A|1278
6YAM|1|2|C|1279
6YAM|1|2|A|1280
6YAM|1|2|G|1281
6YAM|1|2|G|1282
6YAM|1|2|A|1283
6YAM|1|2|U|1284
6YAM|1|2|U|1285
6YAM|1|2|G|1286
*
6YAM|1|2|C|1305
6YAM|1|2|U|1306
6YAM|1|2|C|1307
6YAM|1|2|G|1308
6YAM|1|2|A|1309
6YAM|1|2|U|1310
6YAM|1|2|U|1311
6YAM|1|2|C|1312

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain M
40S ribosomal protein eS10
Chain O
40S ribosomal protein eS12
Chain e
ribosomal protein uS14
Chain f
ribosomal protein eS31

Coloring options:


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