IL_6YAM_108
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAM_108 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.5048
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6YAM|1|2|G|803
6YAM|1|2|A|804
6YAM|1|2|A|805
6YAM|1|2|A|806
6YAM|1|2|A|807
6YAM|1|2|A|808
6YAM|1|2|A|809
6YAM|1|2|U|810
6YAM|1|2|U|811
*
6YAM|1|2|A|845
6YAM|1|2|C|846
6YAM|1|2|C|847
6YAM|1|2|G|848
6YAM|1|2|C|849
6YAM|1|2|A|850
6YAM|1|2|G|851
6YAM|1|2|C|852
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein eS4
- Chain L
- 40S ribosomal protein uS4
- Chain N
- 40S ribosomal protein uS17
- Chain Y
- 40S ribosomal protein uS8
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