IL_6YAN_011

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6YAN|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.139

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6YAN|1|2|G|145
6YAN|1|2|G|146
6YAN|1|2|A|147
6YAN|1|2|U|148
6YAN|1|2|A|149
6YAN|1|2|A|150
6YAN|1|2|C|151
*
6YAN|1|2|G|167
6YAN|1|2|C|168
6YAN|1|2|U|169
6YAN|1|2|A|170
6YAN|1|2|A|171
6YAN|1|2|U|172
6YAN|1|2|A|173
6YAN|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6

Chain a

40S ribosomal protein S24