IL_6YAN_020

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6YAN|1|2|U|418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_020 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1444

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6YAN|1|2|G|401
6YAN|1|2|G|402
6YAN|1|2|G|403
*
6YAN|1|2|C|414
6YAN|1|2|G|415
6YAN|1|2|A|416
6YAN|1|2|U|417
6YAN|1|2|U|418
6YAN|1|2|C|419

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S9 (Predicted)

Chain Z

40S ribosomal protein uS12