IL_6YAN_028

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

6YAN|1|2|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_028 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2578

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6YAN|1|2|G|553
6YAN|1|2|A|554
6YAN|1|2|G|555
*
6YAN|1|2|C|575
6YAN|1|2|G|576
6YAN|1|2|A|577
6YAN|1|2|G|578
6YAN|1|2|G|579
6YAN|1|2|A|580
6YAN|1|2|U|581
6YAN|1|2|C|582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain i

40S ribosomal protein eS30