IL_6YAN_034

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_034 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1812

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6YAN|1|2|G|655
6YAN|1|2|U|656
6YAN|1|2|U|657
6YAN|1|2|A|658
6YAN|1|2|A|659
6YAN|1|2|A|660
6YAN|1|2|A|661
*
6YAN|1|2|U|1157
6YAN|1|2|C|1158

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein uS5

Chain Z

40S ribosomal protein uS12

Chain b

40S ribosomal protein eS26