IL_6YAN_043

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GACCGC*GAGGC

Length

11 nucleotides

Bulged bases

6YAN|1|2|C|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_043 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3207

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6YAN|1|2|G|870
6YAN|1|2|A|871
6YAN|1|2|C|872
6YAN|1|2|C|873
6YAN|1|2|G|874
6YAN|1|2|C|875
*
6YAN|1|2|G|903
6YAN|1|2|A|904
6YAN|1|2|G|905
6YAN|1|2|G|906
6YAN|1|2|C|907

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein eS7

Chain N

Ribosomal protein S11