IL_6YAN_049

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6YAN|1|2|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_049 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1719

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6YAN|1|2|G|948
6YAN|1|2|C|949
6YAN|1|2|U|950
6YAN|1|2|A|951
6YAN|1|2|G|952
*
6YAN|1|2|C|963
6YAN|1|2|U|964
6YAN|1|2|U|965
6YAN|1|2|G|966
6YAN|1|2|G|967
6YAN|1|2|A|968
6YAN|1|2|C|969
6YAN|1|2|C|970

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 2 subunit 1

Chain D

ribosomal protein eS1

Chain Q

40S ribosomal protein uS11