IL_6YAN_067

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6YAN|1|2|C|1327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_067 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1243

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6YAN|1|2|U|1325
6YAN|1|2|G|1326
6YAN|1|2|C|1327
6YAN|1|2|A|1328
6YAN|1|2|U|1329
*
6YAN|1|2|A|1494
6YAN|1|2|U|1495
6YAN|1|2|G|1496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

histone 4 (H4) mRNA

Chain F

Ribosomal protein S3

Chain M

40S ribosomal protein eS10

Chain W

Ribosomal_S10 domain-containing protein

Chain e

ribosomal protein uS14

Chain f

ribosomal protein eS31