IL_6YAN_069
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6YAN|1|2|A|1485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAN_069 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.238
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6YAN|1|2|C|1333
6YAN|1|2|G|1334
*
6YAN|1|2|C|1484
6YAN|1|2|A|1485
6YAN|1|2|G|1486
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- histone 4 (H4) mRNA
- Chain E
- 40S ribosomal protein uS5
- Chain F
- Ribosomal protein S3
- Chain W
- Ribosomal_S10 domain-containing protein
- Chain e
- ribosomal protein uS14
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