IL_6YAN_072
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6YAN|1|2|U|1393
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAN_072 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3316
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6YAN|1|2|C|1391
6YAN|1|2|A|1392
6YAN|1|2|U|1393
6YAN|1|2|G|1394
6YAN|1|2|C|1395
*
6YAN|1|2|G|1443
6YAN|1|2|A|1444
6YAN|1|2|G|1445
6YAN|1|2|G|1446
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- ribosomal protein uS9
- Chain T
- ribosomal protein eS17
- Chain W
- Ribosomal_S10 domain-containing protein
- Chain g
- ribosomal protein RACK1
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