IL_6YAN_073

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6YAN|1|2|C|1399, 6YAN|1|2|U|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_073 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2012

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6YAN|1|2|A|1398
6YAN|1|2|C|1399
6YAN|1|2|U|1400
6YAN|1|2|A|1401
*
6YAN|1|2|U|1437
6YAN|1|2|U|1438
6YAN|1|2|C|1439
6YAN|1|2|U|1440

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

ribosomal protein uS9

Chain W

Ribosomal_S10 domain-containing protein

Chain g

ribosomal protein RACK1