IL_6YAN_074

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UACG*CCCCA

Length

9 nucleotides

Bulged bases

6YAN|1|2|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_074 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3922

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6YAN|1|2|U|1404
6YAN|1|2|A|1405
6YAN|1|2|C|1406
6YAN|1|2|G|1407
*
6YAN|1|2|C|1430
6YAN|1|2|C|1431
6YAN|1|2|C|1432
6YAN|1|2|C|1433
6YAN|1|2|A|1434

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

ribosomal protein uS9

Chain V

40S ribosomal protein eS19

Chain W

Ribosomal_S10 domain-containing protein