IL_6YAN_084

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_084 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1169

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6YAN|1|2|G|1697
6YAN|1|2|C|1698
6YAN|1|2|C|1699
6YAN|1|2|C|1700
*
6YAN|1|2|G|1823
6YAN|1|2|U|1824
6YAN|1|2|A|1825
6YAN|1|2|A|1826
6YAN|1|2|C|1827

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

histone 4 (H4) mRNA

Chain l

60s ribosomal protein l41