IL_6YAN_086

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6YAN|1|2|A|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_086 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.3945

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6YAN|1|2|C|1703
6YAN|1|2|G|1704
6YAN|1|2|C|1705
6YAN|1|2|U|1706
*
6YAN|1|2|A|1816
6YAN|1|2|A|1817
6YAN|1|2|A|1818
6YAN|1|2|A|1819
6YAN|1|2|G|1820

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

histone 4 (H4) mRNA

Chain Z

40S ribosomal protein uS12

Chain l

60s ribosomal protein l41