IL_6YAN_088
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAN_088 not in the Motif Atlas
- Geometric match to IL_4LFB_060
- Geometric discrepancy: 0.1425
- The information below is about IL_4LFB_060
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
6YAN|1|2|C|1712
6YAN|1|2|G|1713
6YAN|1|2|A|1714
6YAN|1|2|U|1715
*
6YAN|1|2|A|1807
6YAN|1|2|G|1808
6YAN|1|2|A|1809
6YAN|1|2|G|1810
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain l
- 60s ribosomal protein l41
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