IL_6YAN_098

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_098 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3515

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6YAN|1|2|G|108
6YAN|1|2|U|109
6YAN|1|2|U|110
6YAN|1|2|A|111
6YAN|1|2|U|112
*
6YAN|1|2|A|339
6YAN|1|2|C|340
6YAN|1|2|G|341
6YAN|1|2|U|342
6YAN|1|2|C|343

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8

Chain N

Ribosomal protein S11