3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
GAC*GUUU
Length
7 nucleotides
Bulged bases
6YAN|1|2|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAN_100 not in the Motif Atlas
Homologous match to IL_8C3A_510
Geometric discrepancy: 0.1522
The information below is about IL_8C3A_510
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.3
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
49

Unit IDs

6YAN|1|2|G|921
6YAN|1|2|A|922
6YAN|1|2|C|923
*
6YAN|1|2|G|1010
6YAN|1|2|U|1011
6YAN|1|2|U|1012
6YAN|1|2|U|1013

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain J
ribosomal protein eS7
Chain P
ribosomal protein uS15
Chain c
40S ribosomal protein S27

Coloring options:


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