IL_6YAN_100
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 6YAN|1|2|U|1012
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAN_100 not in the Motif Atlas
- Homologous match to IL_8C3A_510
- Geometric discrepancy: 0.1522
- The information below is about IL_8C3A_510
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 49
Unit IDs
6YAN|1|2|G|921
6YAN|1|2|A|922
6YAN|1|2|C|923
*
6YAN|1|2|G|1010
6YAN|1|2|U|1011
6YAN|1|2|U|1012
6YAN|1|2|U|1013
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein eS7
- Chain P
- ribosomal protein uS15
- Chain c
- 40S ribosomal protein S27
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