IL_6YAN_101
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6YAN|1|2|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAN_101 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3616
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YAN|1|2|G|1277
6YAN|1|2|A|1278
6YAN|1|2|C|1279
6YAN|1|2|A|1280
6YAN|1|2|G|1281
6YAN|1|2|G|1282
6YAN|1|2|A|1283
6YAN|1|2|U|1284
6YAN|1|2|U|1285
6YAN|1|2|G|1286
*
6YAN|1|2|C|1305
6YAN|1|2|U|1306
6YAN|1|2|C|1307
6YAN|1|2|G|1308
6YAN|1|2|A|1309
6YAN|1|2|U|1310
6YAN|1|2|U|1311
6YAN|1|2|C|1312
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein eS10
- Chain O
- 40S ribosomal protein S12
- Chain e
- ribosomal protein uS14
- Chain f
- ribosomal protein eS31
Coloring options: