IL_6YBW_002

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YBW_002 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.119

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6YBW|1|A|U|26
6YBW|1|A|A2M|27
6YBW|1|A|U|28
*
6YBW|1|A|G|646
6YBW|1|A|U|647
6YBW|1|A|A|648

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S23