IL_6YBW_008
3D structure
- PDB id
- 6YBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex - 40S body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6YBW|1|A|C|65, 6YBW|1|A|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YBW_008 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1905
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YBW|1|A|U|63
6YBW|1|A|A|64
6YBW|1|A|C|65
6YBW|1|A|G|66
6YBW|1|A|C|67
6YBW|1|A|A|68
*
6YBW|1|A|U|81
6YBW|1|A|G|82
6YBW|1|A|A|83
6YBW|1|A|A|84
6YBW|1|A|A|85
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain S
- 40S ribosomal protein S6
- Chain T
- 40S ribosomal protein S24
Coloring options: