IL_6YBW_068

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YBW_068 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1988

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6YBW|1|A|C|1742
6YBW|1|A|G|1743
6YBW|1|A|G|1744
6YBW|1|A|A|1745
6YBW|1|A|U|1746
*
6YBW|1|A|A|1788
6YBW|1|A|G|1789
6YBW|1|A|A|1790
6YBW|1|A|A|1791
6YBW|1|A|G|1792

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6