IL_6YBW_069

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

6YBW|1|A|G|113, 6YBW|1|A|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|G|108
6YBW|1|A|U|109
6YBW|1|A|U|110
6YBW|1|A|A|111
6YBW|1|A|U|112
6YBW|1|A|G|113
6YBW|1|A|G|114
6YBW|1|A|U|115
*
6YBW|1|A|A|348
6YBW|1|A|A|349
6YBW|1|A|C|350
6YBW|1|A|G|351
6YBW|1|A|U|352
6YBW|1|A|C|353

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8