IL_6YDP_006
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCCAG*CAAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_006 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.2293
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6YDP|1|AA|U|81
6YDP|1|AA|C|82
6YDP|1|AA|C|83
6YDP|1|AA|A|84
6YDP|1|AA|G|85
*
6YDP|1|AA|C|97
6YDP|1|AA|A|98
6YDP|1|AA|A|99
6YDP|1|AA|A|100
6YDP|1|AA|A|101
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AP
- 28S ribosomal protein S16, mitochondrial
- Chain AQ
- uS17m
- Chain Ac
- Mitochondrial ribosomal protein S25
- Chain Aj
- mS34
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