IL_6YDP_014

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGUAAAUCU*AUUA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|U|230
6YDP|1|AA|G|231
6YDP|1|AA|G|232
6YDP|1|AA|U|233
6YDP|1|AA|A|234
6YDP|1|AA|A|235
6YDP|1|AA|A|236
6YDP|1|AA|U|237
6YDP|1|AA|C|238
6YDP|1|AA|U|239
*
6YDP|1|AA|A|264
6YDP|1|AA|U|265
6YDP|1|AA|U|266
6YDP|1|AA|A|267

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AL

Mitochondrial ribosomal protein S12

Chain Ai

mS33

Chain Ap

28S ribosomal protein S18b, mitochondrial