IL_6YDP_020

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_020 not in the Motif Atlas

Geometric match to IL_3WBM_004

Geometric discrepancy: 0.2458

The information below is about IL_3WBM_004

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_18188.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6YDP|1|AA|C|373
6YDP|1|AA|C|374
6YDP|1|AA|A|375
*
6YDP|1|AA|U|382
6YDP|1|AA|G|383

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

bS6m

Chain AR

Mitochondrial ribosomal protein S18C

Chain AU

bS21m

Chain Am

mS37